| # | Title | Artist | Rating | Length |
|---|
| 1 | Metroid Fusion Arranged Version | Shinji Hosoe | 4 | 5:19 |
| 2 | Title | Minako Hamano & Akira Fujiwara | 3 | 1:18 |
| 3 | Sector 1 (SRX) SR388 Reproduction Area | Minako Hamano & Akira Fujiwara | 3 | 2:51 |
| 4 | Environment Sound (Silence 1) | Minako Hamano & Akira Fujiwara | 3 | 0:46 |
| 5 | Environment Sound (Tension) | Minako Hamano & Akira Fujiwara | 3 | 0:42 |
| 6 | Environment Sound (Shock) | Minako Hamano & Akira Fujiwara | 3 | 0:28 |
| 7 | Head to the Huge Bio-Reactions | Minako Hamano & Akira Fujiwara | 3 | 1:47 |
| 8 | Tension Before a Confrontation | Minako Hamano & Akira Fujiwara | 3 | 0:39 |
| 9 | VS. Arachnus | Minako Hamano & Akira Fujiwara | 3 | 1:30 |
| 10 | X Invasion Detection | Minako Hamano & Akira Fujiwara | 3 | 1:24 |
| 11 | Navigation Room | Minako Hamano & Akira Fujiwara | 3 | 0:48 |
| 12 | VS. Core-X, Fake Chozo Statue Second Form | Minako Hamano & Akira Fujiwara | 3 | 1:08 |
| 13 | Environment Sound (Disquieting) | Minako Hamano & Akira Fujiwara | 3 | 0:38 |
| 14 | Sector 2 (TRO) Tropics Area | Minako Hamano & Akira Fujiwara | 3 | 1:34 |
| 15 | VS. Zazabi, Varia Core-X | Minako Hamano & Akira Fujiwara | 3 | 1:45 |
| 16 | Environment Sound (Silence 2) | Minako Hamano & Akira Fujiwara | 3 | 1:05 |
| 17 | Sector 4 (AQA) Water Level Control Area | Minako Hamano & Akira Fujiwara | 3 | 4:23 |
| 18 | VS. Ishtar, Gedo | Minako Hamano & Akira Fujiwara | 4 | 1:43 |
| 19 | Sector 3 (PYR) High Temperature Zone Area | Minako Hamano & Akira Fujiwara | 3 | 2:09 |
| 20 | VS. Box | Minako Hamano & Akira Fujiwara | 3 | 0:48 |
| 21 | Sector 6 (NOC) Darkness Area | Minako Hamano & Akira Fujiwara | 3 | 2:59 |
| 22 | SA-X Appearance | Minako Hamano & Akira Fujiwara | 3 | 0:39 |
| 23 | Sector 5 (ARC) Low Temperature Zone Area | Minako Hamano & Akira Fujiwara | 3 | 1:11 |
| 24 | Sector 3 Emergency Occurrence | Minako Hamano & Akira Fujiwara | 3 | 0:32 |
| 25 | Sector 3 Cooling Device Restoration Timer Mission | Minako Hamano & Akira Fujiwara | 3 | 2:44 |
| 26 | Environment Sound (Intrigue) | Minako Hamano & Akira Fujiwara | 3 | 0:57 |
| 27 | VS. Fake Chozo Statue First Form | Minako Hamano & Akira Fujiwara | 3 | 0:47 |
| 28 | VS. Nightmare | Minako Hamano & Akira Fujiwara | 3 | 1:02 |
| 29 | Sector 4 (AQA) Underwater Area | Minako Hamano & Akira Fujiwara | 4 | 2:36 |
| 30 | VS. Neo Ridley | Minako Hamano & Akira Fujiwara | 4 | 0:56 |
| 31 | The Last Order | Minako Hamano & Akira Fujiwara | 3 | 1:16 |
| 32 | VS. SA-X | Minako Hamano & Akira Fujiwara | 3 | 0:36 |
| 33 | Station Escape Timer Mission | Minako Hamano & Akira Fujiwara | 4 | 0:56 |
| 34 | Epilogue | Minako Hamano & Akira Fujiwara | 3 | 1:15 |
| 35 | Ending | Minako Hamano & Akira Fujiwara | 3 | 3:19 |
| 36 | Appearance Jingle | Minako Hamano & Akira Fujiwara | 3 | 0:07 |
| 37 | Item Obtainment Jingle | Minako Hamano & Akira Fujiwara | 3 | 0:08 |